Three years ago, Special Weapons Division deactivated a highly advanced Superweapon: a 200-foot tall DNA Droid called X66-7 or "Kodoja". Today, Kodoja reactivated without warning and cut a swath of destruction across America, leveling every outpost of Special Weapons Division, save one. Now, the chief designer of Kodoja, Jennifer Cruz must stop the weapon she designed too well.
With the world still reacting to an explosion of kaiju battling it out in Kamchatka, Professor Murakami and Secretary Velez continue their investigation into the Cosmic Awakening and the potential human link to the monsters emerging from their planetary slumber. Far away, Generals Cruz and Williams of Special Weapons Division arrive in Vanuatu, close to tracking down Kodoja, and as the giant monsters continue to clash, it becomes clear that Kodoja is in for the fight of its life.